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IGVFFI8152KWZQ

released
validated
File Set
IGVFDS9547KOMP(STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18861, NA18917, NA19198, NA19201, NA19206)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-rna-fastq-k562-P016-R1
md5sum
c5fa23b4981ee8f1f02123d464d7f459
Content MD5sum
3b99deed087da07fd6c4c6d19ad35ae3
File Size
10 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.rna.pool16.R1.fastq.gz
Checkfiles Version
v14
Attribution
Tim Reddy, Duke

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AAFJG3WM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R1
Average Read Length
301
Read Count
79269916

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files Derived From This File

2 items
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
9.9 GB
validated
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
10.0 GB
validated