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INDEXED
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SequenceFile
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IGVFFI8152JUHC
IGVFFI8152JUHC
released
validated
Json view
File Set
IGVFDS7359TFTN
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x2_NGS3_r3
md5sum
44c884283b745462827d85cd172ac8f8
Content MD5sum
0cbe1eb4afa4ec92be4ce655cc6a584f
File Size
5.1 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC2_S6_L003_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
169230139
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5189FTFS
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2013BVRU
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.5 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI1510CBWW
yaml
seqspec
seqspec of IGVFFI2221QTKE, IGVFFI5994KKRZ, IGVFFI8127WKJW, IGVFFI8152JUHC
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford