IGVFFI8144STLI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4337OWGM(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X036_G3_P037_L001_R2

md5sum

fa3443ee5c9c2f20dc6fe7f3565a9d1a

Content MD5sum

f85ba8b2ed37d531867faa93531396ea

File Size

4.0 GB

Submitted File Name

Multiome_ATAC_X036_G3_L003_P037_S1_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

225373299

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8150RMYY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples