IGVFFI8133TZUQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2850BWAN(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G3_P057_L003_I1

md5sum

f86a90e5f0650870e74156652b6a5b7f

Content MD5sum

b7fcee1dbd9d08d4b91dc5a1b898a92e

File Size

346 MB

Submitted File Name

Multiome_ATAC_RP010_G3_L003_P057_S19_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

47083496

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7086NABQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples