Home

IGVFFI8126MURA

released
validated
File Set
IGVFDS4856BVTB(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp16_atac_10x3_NGS1_r1
md5sum
fb69750e02317ff74d8267644b361021
Content MD5sum
35666dc0bdf96c68883e3f0b7f122185
File Size
8.0 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/ATAC/CMAS18_ATAC3_S60_L005_R1_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NC7YLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
259979612

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.8 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8126MURA, IGVFFI1977THVF, IGVFFI2302XIQC, IGVFFI6842CFBA
Ansuman Satpathy, Stanford
1.4 KB
validated