IGVFFI8126IWTS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2206FNPO(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G3_P071_L007_R2

md5sum

bc6c55278e2cc9796f2d81abf0a292ce

Content MD5sum

9a60d0482b7c9552687844be7db147dd

File Size

3.1 GB

Submitted File Name

Multiome_ATAC_X053_G3_L003_P071_S47_L007_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

180696947

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2566PNRB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples