IGVFFI8115RHRN

released

validated

File Set

IGVFDS6541EVXL(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR2_Rep1_S34

md5sum

2718cf4b4a1be7bc24f207bc471cc0ed

Content MD5sum

8c15ee990f6f3f1585d738d1d8cca81b

File Size

38 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF2-BinD-PCR2-Rep1_S34_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

GTCTGATG:TGCG

Average Read Length

Read Count

1939106

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM9894YYOA

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin D for 55-65% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library