IGVFFI8107HHBW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2206FNPO(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G3_P071_L007_R3

md5sum

0fd42d177dc083506b843266d5bba367

Content MD5sum

42efda26f89cd7b1b7bfef780a3d9454

File Size

12 GB

Submitted File Name

Multiome_ATAC_X053_G3_L003_P071_S47_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

180696947

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2566PNRB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples