IGVFFI8106DZSG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2301ZZAH(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G1_P025_L001_R2

md5sum

b0b24eccd4b09f27ff8efe99c8c79f95

Content MD5sum

d3011d7419bf476c92fb3416f24c3530

File Size

2.3 GB

Submitted File Name

Multiome_ATAC_X026_G1_L001_P025_S2_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

132368205

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7524IPCT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples