IGVFFI8097OZDG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5369HKHB(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X046_G3_P048_L004_I2

md5sum

a754d369d6c259353b85b69dc7d32cbc

Content MD5sum

7906902e2008c54914d19941b3e26a57

File Size

1.7 GB

Submitted File Name

Multiome_RNA_X046_G3_L003_P048_S15_L004_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

258089493

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5266CSDR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples