{
"@context": "/terms/",
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],
"accession": "IGVFFI8085XVBU",
"aliases": [
"ansuman-satpathy:igvf_exp4_multi_10x2_NGS2_r2"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"content_md5sum": "13c75e358d37c181590260fa764f36d7",
"content_type": "reads",
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"creation_timestamp": "2024-07-22T16:19:51.342117+00:00",
"externally_hosted": false,
"file_format": "fastq",
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"FileSet",
"Item"
],
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"file_set_type": "lipid-conjugated oligo sequencing",
"samples": [
{
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],
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"classifications": [
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],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
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"summary": "multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
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"purpose": "differentiation",
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"summary": "Treatment of 0.025 ng/mL acetylated low density lipoprotein for 1 day",
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},
{
"@id": "/treatments/729630f8-aa05-47f5-9cba-ee7a264da593/",
"purpose": "differentiation",
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"summary": "Treatment of 50 ng/mL interleukin 4 for 1 day",
"treatment_term_name": "interleukin 4"
},
{
"@id": "/treatments/ae8065d2-85f3-498e-b4f2-01a38756d48e/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 20 ng/mL interferon gamma for 1 day",
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},
{
"@id": "/treatments/bec71d5e-97ef-489a-acb7-5336691b6c39/",
"purpose": "differentiation",
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"summary": "Treatment of 100 ng/mL macrophage colony-stimulating factor 1 for 7 days",
"treatment_term_name": "macrophage colony-stimulating factor 1"
}
]
}
],
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"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
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"input_file_for": [
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"integrated_in": [],
"lab": {
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"title": "Ansuman Satpathy, Stanford"
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"maximum_read_length": 90,
"md5sum": "e41c3aecbdf7bb8b39a2059c65a7d838",
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"quality_metrics": [],
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"release_timestamp": "2025-03-07T01:11:30.970516+00:00",
"s3_uri": "s3://igvf-files/2024/07/22/ea1b0265-cfdb-49f5-808f-7757a63eaef9/IGVFFI8085XVBU.fastq.gz",
"schema_version": "15",
"seqspecs": [
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],
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"status": "released",
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"summary": "R2 reads from sequencing run 1",
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"uuid": "ea1b0265-cfdb-49f5-808f-7757a63eaef9"
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