IGVFFI8083YGMZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0609EETP(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X035_G6_P036_L004_R2

md5sum

724a900b6cb762f7fabbf131e9fe3541

Content MD5sum

248efd13b8829ba23243b759627b4746

File Size

9.0 GB

Submitted File Name

Multiome_RNA_X035_G6_L006_P036_S52_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

160386195

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5298RMGT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples