IGVFFI8078ZIFD

released

validated

File Set

IGVFDS8349EMBV(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep2_S180

md5sum

828b9bd246a33b13fd82b929f9214d34

Content MD5sum

ed680723c05cdad6688355d887b5adbc

File Size

26 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR3-Rep2_S180_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

TCGGAATG:GCCA

Average Read Length

Read Count

1320495

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM3296OBHK

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library