IGVFFI8065IIPM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5607SKBT(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X031_G3_P032_L004_R1

md5sum

f59c7032e71160b7b65e2311799f792a

Content MD5sum

6e0a441707f3d8a2e3b09fc0f5c0d6a0

File Size

17 GB

Submitted File Name

Multiome_RNA_X031_G3_L003_P032_S45_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

262652853

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8532DSVV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples