Home

IGVFFI8056IYUI

released
validated
File Set
IGVFDS4205JWPE(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 4
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-DSS16-prim-9K-1-RNA.R2.fastq.gz
md5sum
f1b043cee09813074b0a2ac5f8f3ce20
Content MD5sum
8d70fb08dafac069e1ed780f6aa59e82
File Size
2.5 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/DSS16-prim-9K-1-RNA.R2.fastq.gz
Checkfiles Version
v14
Submitter Comment
DSS16-prim-9k-1_P1.01
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
100
Read Count
41081080

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
111 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3746KQEY, IGVFFI8056IYUI, IGVFFI2776KNRR
Jason Buenrostro, Broad
1.2 KB
validated