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IGVFFI8045BKNA

released
validated
File Set
IGVFDS4370KUWU(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_rna_10x2_NGS1_r2
md5sum
cc72658b7924265f46b6418f8c70fde8
Content MD5sum
dc91c95ff33f6acf9200ca5bfad3ba6d
File Size
12 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/GEX/FASTQ/GEX_2_CMAS_IGVF9_R_S8_L001_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHYLT3
Lane
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
278411842

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
218 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3552KANN, IGVFFI8045BKNA, IGVFFI9202YRAH, IGVFFI3919MNJT
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford