IGVFFI8022UDKQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3740TKOB(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X031_G7_P032_L004_R1

md5sum

bc8c05ef388fde92a62ab8d883067054

Content MD5sum

74d66c2cc01790a0a4c8da46729280b0

File Size

14 GB

Submitted File Name

Multiome_RNA_X031_G7_L007_P032_S49_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

208929300

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9556BXER

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples