IGVFFI8013ONLV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5090QXVJ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G5_P071_L006_I1

md5sum

8dbdf10ddbbad0a7a88fc1fdd495fb27

Content MD5sum

4eee35518dc11bfb1faff050b43c5b34

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X053_G5_L005_P071_S49_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

165879241

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4261OSAU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples