IGVFFI8009AYNA

released
validated
File Set
IGVFDS2385QENN(scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jay-shendure:CRISPRa_singlecell_iPSCneuron_VPH_sequence_exprs_10Xlane3_seqlane2_I2
md5sum
16cbc1ab14166954b1f8e9ed5e00e2ee
Content MD5sum
7341665c773f1a6a234f77297b4400c9
File Size
655 MB
Submitted File Name
/net/shendure/vol10/www/content/members/CRISPRa_QTL_website/public/data/neuron_data/sequencing_data/cellranger_mkfastq_output/outs/fastq_path/AAAMCTVHV/exprs_3/exprs_3_S3_L002_I2_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Flowcell ID
AAAMCTVHV
Lane
2
Sequencing Kit
NextSeq 1000/2000 P3 Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
110419135

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane3), male, Homo sapiens modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Jay Shendure, UW
442 MB
validated

Attribution