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IGVFFI7989IFOS

released
validated
File Set
IGVFDS9385ZIKY(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_atac_10x3_NGS2_r3
md5sum
546ab929173f26c450d782a8e4c0ab1a
Content MD5sum
7e083ea50c0963cc15ccc94e2df18d72
File Size
12 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/ATAC/FASTQ/ATAC_3CMAS_IGVF9_A_S23_L006_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JGVLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
416977006

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.6 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7766NKAR, IGVFFI7989IFOS, IGVFFI1801YETN, IGVFFI2742KJIH
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford