{
"@context": "/terms/",
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],
"accession": "IGVFFI7987EKPT",
"aliases": [
"jay-shendure:bulkMPRA_devCRE_mEBs_repA_day12_DNA_R2"
],
"assay_titles": [
"MPRA"
],
"audit": {},
"award": {
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"component": "functional characterization"
},
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"content_type": "reads",
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"creation_timestamp": "2023-12-09T00:54:53.178936+00:00",
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"file_set": {
"@id": "/auxiliary-sets/IGVFDS7059CWBY/",
"accession": "IGVFDS7059CWBY",
"file_set_type": "quantification DNA barcode sequencing",
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{
"@id": "/in-vitro-systems/IGVFSM1756IJDM/",
"accession": "IGVFSM1756IJDM",
"classifications": [
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],
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{
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"status": "released",
"term_name": "mouse embryonic stem cell"
}
],
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"status": "released",
"term_name": "embryoid body"
},
"taxa": "Mus musculus"
}
],
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"summary": "quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci"
},
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"flowcell_id": "HNGFGBGXL",
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"href": "/sequence-files/IGVFFI7987EKPT/@@download/IGVFFI7987EKPT.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [
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"/tabular-files/IGVFFI4223UWJR/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
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"maximum_read_length": 8,
"md5sum": "9e45462d1c77cba4d8401a6f0e18613d",
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"release_timestamp": "2024-06-27T00:41:17.567585+00:00",
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"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "NextSeq 500/550 High-Output v2.5 Kit",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 500"
},
"sequencing_run": 1,
"status": "released",
"submitted_by": {
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"title": "Beth Martin"
},
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/bulkMPRA_devCRE_mEBs/bulk_MPRA_mEB_series_mBC_repA_d12_DNA_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "6ba93c20-acb7-4825-9fd7-31e5e6b42243"
}