IGVFFI7972JKSB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1843SBYD(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G1_P073_L003_R2

md5sum

d375b97bf120280bf2b3a9a05cfcd7f2

Content MD5sum

5cac2e4bef2ca6585cbb7ecce2391fb5

File Size

2.6 GB

Submitted File Name

Multiome_ATAC_X056_G1_L001_P073_S9_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

148180543

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3628YHAV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples