IGVFFI7943SEFB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4622EOTO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G1_P037_L001_R1

md5sum

20f63837eb671f8a186ff2f86e03eec5

Content MD5sum

682427486af575ce1fcbef92445c6c86

File Size

5.6 GB

Submitted File Name

Multiome_ATAC_X037_G1_L001_P037_S7_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

179208869

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7070UBPG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples