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IGVFFI7934ZMBN
IGVFFI7934ZMBN
released
validated
Json view
File Set
IGVFDS1381KOVA
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp17_rna_10x4_NGS4_r2
md5sum
27bf21462e0e6f792ee8f787a16e668c
Content MD5sum
10fca06b02f2463a09d862d31f87e8ba
File Size
8.5 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf17/GEX/CMAS19_GEX4_S168_L008_R2_001.fastq.gz
Checkfiles Version
v14
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NCYLLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
236134457
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9149ZACE
MultiplexedSample
RUES2
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8511XOAV
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
136 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4299ENXR
yaml
seqspec
seqspec of IGVFFI9066SKTV, IGVFFI7934ZMBN, IGVFFI7374OCNF, IGVFFI7951TRNJ
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford