IGVFFI7928KWSV

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI7928KWSV/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI7928KWSV",
    "aliases": [
        "jay-shendure:scATAC_mEBs_rep2_day21_10XlaneA_reseq_R2"
    ],
    "assay_titles": [
        "scATAC-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "e8504a5bcf06dd8dc8df658f5befec11",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-09T00:57:51.481507+00:00",
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS7446XPVQ/",
        "accession": "IGVFDS7446XPVQ",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM7126ZMPT/",
                "accession": "IGVFSM7126ZMPT",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0004038/",
                        "term_name": "mouse embryonic stem cell"
                    }
                ],
                "summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44",
                "taxa": "Mus musculus"
            }
        ],
        "summary": "scATAC-seq"
    },
    "file_size": 3343112538,
    "flowcell_id": "H3HFJBGXG",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI7928KWSV/@@download/IGVFFI7928KWSV.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/signal-files/IGVFFI9468KRLQ/",
        "/signal-files/IGVFFI4530JOCA/",
        "/signal-files/IGVFFI4106YTGZ/",
        "/signal-files/IGVFFI6250RJNE/",
        "/signal-files/IGVFFI4871DVXE/",
        "/signal-files/IGVFFI8400FXRX/",
        "/signal-files/IGVFFI9916JAHE/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 50,
    "md5sum": "5a285dd25011bbf8270e3e0d5a210392",
    "mean_read_length": 50,
    "minimum_read_length": 50,
    "read_count": 96361869,
    "release_timestamp": "2024-07-09T20:16:42.735848+00:00",
    "s3_uri": "s3://igvf-files/2023/12/09/71d76129-661b-43f5-aca0-c553aa4b1194/IGVFFI7928KWSV.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI4458PPBH/"
    ],
    "sequencing_kit": "NextSeq 500/550 High-Output v2.5 Kit",
    "sequencing_platform": "/platform-terms/EFO_0009173/",
    "sequencing_run": 2,
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/scATAC_mEBs/scATAC_mEBs_d21_crispri_rep2_lane_a_reseq_R2_001.fastq.gz",
    "summary": "R2 reads from sequencing run 2",
    "upload_status": "validated",
    "uuid": "71d76129-661b-43f5-aca0-c553aa4b1194"
}