IGVFFI7918KVAQ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI7918KVAQ/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI7918KVAQ",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "9897ced10ed6f2da583d600ee02d56ce",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-07T11:28:23.976462+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS0650LFIN/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS0650LFIN",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "data_use_limitation_summaries": [
37            "no certificate"
38        ],
39        "file_set_type": "experimental data",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM3385IZRM/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM3385IZRM",
49                "classifications": [
50                    "tissue",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [],
54                "modifications": [],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/UBERON_0000007/",
58                        "status": "released",
59                        "term_name": "pituitary gland"
60                    },
61                    {
62                        "@id": "/sample-terms/UBERON_0001898/",
63                        "status": "released",
64                        "term_name": "hypothalamus"
65                    },
66                    {
67                        "@id": "/sample-terms/UBERON_0002107/",
68                        "status": "released",
69                        "term_name": "liver"
70                    }
71                ],
72                "status": "released",
73                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
74                "taxa": "Mus musculus",
75                "treatments": []
76            }
77        ],
78        "status": "released",
79        "summary": "Parse SPLiT-seq"
80    },
81    "file_size": 14309705083,
82    "flowcell_id": "HV22FDSX5",
83    "gene_list_for": [],
84    "href": "/sequence-files/IGVFFI7918KVAQ/@@download/IGVFFI7918KVAQ.fastq.gz",
85    "illumina_read_type": "R1",
86    "input_file_for": [
87        "/matrix-files/IGVFFI6916PWXO/"
88    ],
89    "integrated_in": [],
90    "lab": {
91        "@id": "/labs/ali-mortazavi/",
92        "title": "Ali Mortazavi, UCI"
93    },
94    "lane": 3,
95    "loci_list_for": [],
96    "maximum_read_length": 140,
97    "md5sum": "579e1e61623dea1636c2fb6ceb8a3562",
98    "mean_read_length": 140,
99    "minimum_read_length": 140,
100    "quality_metrics": [],
101    "read_count": 208995384,
102    "read_names": [
103        "Read 1"
104    ],
105    "release_timestamp": "2025-04-18T23:24:54.650970+00:00",
106    "s3_uri": "s3://igvf-files/2023/10/07/b4f4d191-1b4e-4b45-a530-dba359119ae7/IGVFFI7918KVAQ.fastq.gz",
107    "schema_version": "15",
108    "seqspecs": [
109        "/configuration-files/IGVFFI9522PFXU/"
110    ],
111    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
112    "sequencing_platform": {
113        "@id": "/platform-terms/EFO_0008637/",
114        "status": "released",
115        "term_name": "Illumina NovaSeq 6000"
116    },
117    "sequencing_run": 3,
118    "status": "released",
119    "submitted_by": {
120        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
121        "title": "Diane Trout"
122    },
123    "submitted_file_name": "igvf_005/nova1/igvf_005_B04_D_nova_N1_L003_R1.fastq.gz",
124    "summary": "R1 reads from sequencing run 3",
125    "upload_status": "validated",
126    "uuid": "b4f4d191-1b4e-4b45-a530-dba359119ae7"
127}