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IGVFFI7878OQMT

released
validated
File Set
IGVFDS1843ABDU(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp3_atac_10x3_NGS2_r1
md5sum
036d018c58420125562bb5a2712ecade
Content MD5sum
cea4b3a81a48cc39518d7acb933df8c0
File Size
10 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF3_McGinnis/ATAC/FASTQ/ATAC_3-_S3_L002_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YV7LT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
51
Read Count
345214757

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 15 days; Homo sapiens (male) HepG2 cell line grown in DMEM without serum; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
3.1 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7878OQMT, IGVFFI1800OYCP, IGVFFI7886ZYNI, IGVFFI2105BOXJ
Ansuman Satpathy, Stanford
1.4 KB
validated