IGVFFI7854UIQP

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI7854UIQP/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI7854UIQP",
    "aliases": [
        "ansuman-satpathy:igvf_exp15_multi_10x1_NGS2_r2"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v14",
    "content_md5sum": "e317f6714a0cbcb888fbfc78ef74942b",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2025-01-28T03:40:59.663112+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS2440YLWS/",
        "accession": "IGVFDS2440YLWS",
        "file_set_type": "lipid-conjugated oligo sequencing",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM2174QALS/",
                "accession": "IGVFSM2174QALS",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
    },
    "file_size": 513207761,
    "flowcell_id": "22NCFCLT3",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI7854UIQP/@@download/IGVFFI7854UIQP.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/tabular-files/IGVFFI1271TKWE/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "lane": 2,
    "loci_list_for": [],
    "maximum_read_length": 90,
    "md5sum": "e2ba17a6ce570b0793d727c9781f7a10",
    "mean_read_length": 90,
    "minimum_read_length": 90,
    "quality_metrics": [],
    "read_count": 10631211,
    "release_timestamp": "2025-03-07T01:14:49.725725+00:00",
    "s3_uri": "s3://igvf-files/2025/01/28/56fbaca3-3e57-42a2-8add-32acf0a0b576/IGVFFI7854UIQP.fastq.gz",
    "schema_version": "15",
    "seqspecs": [
        "/configuration-files/IGVFFI1863VSEI/"
    ],
    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0022840/",
        "status": "released",
        "term_name": "Illumina NovaSeq X"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI1_S4_L002_R2_001.fastq.gz",
    "summary": "R2 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "56fbaca3-3e57-42a2-8add-32acf0a0b576"
}