IGVFFI7844PCXD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6822SLYX(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X017_G6_P016_L004_R1

md5sum

37aad8e64e7da43160706194ed0feda4

Content MD5sum

512ea0d59d66b649a5dc204940e17f8b

File Size

4.8 GB

Submitted File Name

Multiome_RNA_X017_G6_L006_P016_S14_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

232600978

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7930LHEX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples