{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI7842KLGN/",
"@type": [
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"File",
"Item"
],
"accession": "IGVFFI7842KLGN",
"aliases": [
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],
"assay_titles": [
"10x multiome"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "106cb9b98c0d041613b1058034ddf9f2",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T01:12:19.251946+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS2154EKES/",
"@type": [
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"FileSet",
"Item"
],
"accession": "IGVFDS2154EKES",
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"term_name": "single-nucleus RNA sequencing assay"
},
"file_set_type": "experimental data",
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{
"@id": "/multiplexed-samples/IGVFSM6328YMOY/",
"@type": [
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"Sample",
"Item"
],
"accession": "IGVFSM6328YMOY",
"classifications": [
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"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "mild cognitive impairment",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"@type": [
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"Item"
],
"status": "in progress",
"summary": "Parkinson's disease",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"@type": [
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"Item"
],
"status": "in progress",
"summary": "multiple sclerosis",
"term_name": "multiple sclerosis"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "cerebral amyloid angiopathy",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"@type": [
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],
"status": "released",
"summary": "Alzheimer disease",
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}
],
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"sample_terms": [
{
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"status": "preview",
"term_name": "putamen"
},
{
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"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002740/",
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"term_name": "posterior cingulate gyrus"
}
],
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"treatments": []
}
],
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},
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"href": "/sequence-files/IGVFFI7842KLGN/@@download/IGVFFI7842KLGN.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"loci_list_for": [],
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"md5sum": "112a20677ec2ff72affd8e9d873895db",
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"minimum_read_length": 151,
"quality_metrics": [],
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"s3_uri": "s3://igvf-files/2025/03/21/0baa100a-0e5d-48ed-a306-b5190792b877/IGVFFI7842KLGN.fastq.gz",
"schema_version": "15",
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"sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NovaSeq X"
},
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"submitted_by": {
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"title": "Ryan Corces"
},
"submitted_file_name": "Multiome_RNA_RP031_G1_L001_P080_S37_L006_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "0baa100a-0e5d-48ed-a306-b5190792b877"
}