IGVFFI7817JYCA

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI7817JYCA/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI7817JYCA",
    "aliases": [
        "ansuman-satpathy:igvf_mouse_bridge_113_atac_r3"
    ],
    "assay_titles": [
        "10x multiome"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "content_md5sum": "b711024c33a9f4ff482e64361e5cdf17",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-07-23T04:17:44.032741+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS3015HARC/",
        "accession": "IGVFDS3015HARC",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/tissues/IGVFSM5224XSCM/",
                "accession": "IGVFSM5224XSCM",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "left cerebral cortex tissue, male, Mus musculus C57BL/6J (10 weeks)",
                "taxa": "Mus musculus"
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome)"
    },
    "file_size": 27941520393,
    "flowcell_id": "HV7LKDSX5",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI7817JYCA/@@download/IGVFFI7817JYCA.fastq.gz",
    "illumina_read_type": "R3",
    "input_file_for": [
        "/tabular-files/IGVFFI7158ODVZ/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 100,
    "md5sum": "5d9bac404b841efa6db895ec8ea73a29",
    "mean_read_length": 100,
    "minimum_read_length": 100,
    "quality_metrics": [],
    "read_count": 507124937,
    "read_names": [
        "Read 2"
    ],
    "release_timestamp": "2025-03-07T01:18:46.337707+00:00",
    "s3_uri": "s3://igvf-files/2024/07/23/74830e39-64af-4113-8645-857bcb109d39/IGVFFI7817JYCA.fastq.gz",
    "schema_version": "15",
    "seqspecs": [
        "/configuration-files/IGVFFI9631IBXG/"
    ],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/230622_IGVF_Bridge_McGinnis/ATAC/ATAC_113_S4_L001_R3_001.fastq.gz",
    "summary": "R3 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "74830e39-64af-4113-8645-857bcb109d39"
}