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INDEXED
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SequenceFile
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IGVFFI7811HPHE
IGVFFI7811HPHE
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS1479ULPQ
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X009_G2_P008_L004_R2
md5sum
78f043dd803f43e3a3b3189c25e24b65
Content MD5sum
2a9d69da4ee6ac041d97be24d007e79f
File Size
11 GB
Submitted File Name
Multiome_RNA_X009_G2_L002_P008_S36_L004_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H5THNDSX5
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
100
Read Count
204160784
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6928XXNG
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples