IGVFFI7807KLUU

released

validated

File Set

IGVFDS2834VAYS(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR1_Rep1_S26

md5sum

c2ed32c6be2d7518fb4c8b89aa897836

Content MD5sum

bab2899a8a752b097e4b43706c21742d

File Size

52 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF2-BinB-PCR1-Rep1_S26_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

AGGATCTA:TGCG

Average Read Length

Read Count

2711667

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM2313EONT

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library