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INDEXED
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SequenceFile
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IGVFFI7773RDCR
IGVFFI7773RDCR
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2812BEMZ
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X029_G4_P030_L002_R2
md5sum
1c9baace7311642dc351434a8708c463
Content MD5sum
4c7d983d2912d4cf9751efc247f10189
File Size
10 GB
Submitted File Name
Multiome_RNA_X029_G4_L004_P030_S16_L002_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HV7VHDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
101
Read Count
189027065
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8186WTLH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples