IGVFFI7745PCUK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2763CAIE(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G3_P025_L001_R2

md5sum

35a903af0d3d1f0effadf28d239e6a23

Content MD5sum

814470766a1cdd0fd6f5164b79ac0a28

File Size

2.2 GB

Submitted File Name

Multiome_ATAC_X026_G3_L003_P025_S4_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

126887952

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0949TONL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples