IGVFFI7744YFOT

released
validated
File Set
IGVFDS8372HZNT(gRNA sequencing for CRISPR interference FACS screen integrating a guide (sgRNA) library targeting transcription start sites in B2M)
Summary
R1 reads from sequencing run 3
File Format
fastq
Content Type
reads
Aliases
charles-gersbach:cd8-tcells-measurement-set-crispri-b2m-low-bin-rep3-R1
md5sum
25e7b659c069bdd2ef297d35ff13e97d
Content MD5sum
046891720311d18598548af7a8db79ba
File Size
18 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_2_T_cell_project_1/B2M-Low-R3_S10_L001_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
3
Flowcell ID
000000000-J9HPF
Lane
1
Sequencing Kit
MiSeq Reagent Kit v2
Illumina Read Type
R1
Average Read Length
22
Read Count
759169

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of b2m) modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bam
alignments
custom assembly unfiltered alignments
Charles Gersbach, Duke
13 MB
validated

Attribution