IGVFFI7733OJCR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2952XLAO(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G2_P075_L005_I1

md5sum

59bfb25353ffc1facf5612991783f30e

Content MD5sum

10da820481c56cc871e1c79ea905b67e

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_RP026_G2_L002_P075_S18_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

174592712

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9641MJVP

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples