IGVFFI7727RWDF

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI7727RWDF/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI7727RWDF",
10    "aliases": [
11        "ansuman-satpathy:igvf_exp17_rna_10x1_NGS1_i1"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v14",
22    "content_md5sum": "d80c0100885d824c7eb0bced497a79f3",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-01-27T22:57:32.553049+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS3953KNVA/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS3953KNVA",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0003109/",
38            "term_name": "single-nucleus RNA sequencing assay"
39        },
40        "controlled_access": false,
41        "data_use_limitation_summaries": [
42            "No limitations"
43        ],
44        "file_set_type": "experimental data",
45        "samples": [
46            {
47                "@id": "/multiplexed-samples/IGVFSM7909ETQJ/",
48                "@type": [
49                    "MultiplexedSample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM7909ETQJ",
54                "classifications": [
55                    "differentiated cell specimen",
56                    "multiplexed sample"
57                ],
58                "disease_terms": [],
59                "modifications": [],
60                "sample_terms": [
61                    {
62                        "@id": "/sample-terms/EFO_0009320/",
63                        "status": "released",
64                        "term_name": "RUES2"
65                    }
66                ],
67                "status": "released",
68                "summary": "multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples",
69                "taxa": "Homo sapiens",
70                "treatments": []
71            }
72        ],
73        "status": "released",
74        "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
75    },
76    "file_size": 1366814407,
77    "flowcell_id": "22NCYLLT3",
78    "gene_list_for": [],
79    "href": "/sequence-files/IGVFFI7727RWDF/@@download/IGVFFI7727RWDF.fastq.gz",
80    "illumina_read_type": "I1",
81    "input_file_for": [
82        "/matrix-files/IGVFFI2022UPKN/"
83    ],
84    "integrated_in": [],
85    "lab": {
86        "@id": "/labs/ansuman-satpathy/",
87        "title": "Ansuman Satpathy, Stanford"
88    },
89    "lane": 5,
90    "loci_list_for": [],
91    "maximum_read_length": 10,
92    "md5sum": "fd5f7a9500bf744066ed508a69d1e4bc",
93    "mean_read_length": 10,
94    "minimum_read_length": 10,
95    "quality_metrics": [],
96    "read_count": 288719379,
97    "release_timestamp": "2025-03-07T01:17:18.769160+00:00",
98    "s3_uri": "s3://igvf-files/2025/01/27/62ab6e39-7592-4c1f-b94f-d8de5e6ff52c/IGVFFI7727RWDF.fastq.gz",
99    "schema_version": "15",
100    "seqspecs": [
101        "/configuration-files/IGVFFI2442IUMY/"
102    ],
103    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
104    "sequencing_platform": {
105        "@id": "/platform-terms/EFO_0022840/",
106        "status": "released",
107        "term_name": "Illumina NovaSeq X"
108    },
109    "sequencing_run": 1,
110    "status": "released",
111    "submitted_by": {
112        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
113        "title": "Christopher Mcginnis"
114    },
115    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf17/GEX/CMAS19_GEX1_S165_L005_I1_001.fastq.gz",
116    "summary": "I1 reads from sequencing run 1",
117    "upload_status": "validated",
118    "uuid": "62ab6e39-7592-4c1f-b94f-d8de5e6ff52c"
119}