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IGVFFI7687JKNF

released
validated
File Set
IGVFDS9620KXMW(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 259
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2068_R1
bradley-bernstein:SS-LS_259_R1
buenrostro-bernstein:SS-LS_2068_R1
buenrostro-bernstein:SS-LS_259_R1
md5sum
020060514641d731984093d5b35e9898
Content MD5sum
b5c82523c766d3d98f04362cd35bab75
File Size
1.1 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-197_L1_SS-PKR-132_SS-V1-RIGHT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
259
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
39382266

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
5.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
962 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7687JKNF, IGVFFI9060BQTU
Jason Buenrostro, Broad
1.2 KB
validated