IGVFFI7687HSUL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5478XCHL(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X025_G7_P025_L001_R3

md5sum

5bf775a86bf98737a85105e354908e01

Content MD5sum

90e25142cf3aa75408f4ff91c22feef8

File Size

3.7 GB

Submitted File Name

Multiome_ATAC_X025_G7_L007_P025_S1_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

118258257

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6749LEWH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples