IGVFFI7663WSCI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7588LMFF(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X015_G5_P014_L002_I2

md5sum

e80cc3214264fa93462c3ad11aea8ec4

Content MD5sum

90089942ab5e1cba45e7d2f01477555b

File Size

1.6 GB

Submitted File Name

Multiome_RNA_X015_G5_L005_P014_S25_L002_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

232049130

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4134PPFH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples