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IGVFFI7660JFBM

released
validated
File Set
IGVFDS8943QPCP(CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus)
Summary
R2 reads from sequencing run 4
File Format
fastq
Content Type
reads
Aliases
charles-gersbach:measurement-set-crispra-region3-mouse-hl1-targeted-hicar-rep2-R2
md5sum
b89fd92cb3fb6e78d0c9b3ab4af46f0f
Content MD5sum
0c54294185ab9e7477d3bd52f205758e
File Size
1.3 GB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispra_mouse/crispra_hicar_mouse_fastq/HL_1_TA446_2_noET1_ds.944e08b21dcc4f068173cb96fe66decb/HL_1_TA446_2_noET1_S15_L001_R2_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
4
Sequencing Kit
NextSeq 1000/2000 P2 Reagent Kit
Illumina Read Type
R2
Average Read Length
100
Read Count
22587957

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
52 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke