IGVFFI7648QYZA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9846PMTW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X021_G5_P021_L001_R1

md5sum

2dd566080d7a3db96c06a9abe4b8877d

Content MD5sum

12ccfd8e631a2e43fb5ea8ae8bd24886

File Size

9.5 GB

Submitted File Name

Multiome_ATAC_X021_G5_L005_P021_S3_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

307478156

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5683BJEZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples