IGVFFI7642UGJH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3587WOCX(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP006_G3_P055_L004_R1

md5sum

963abc3f69899d174dfa5962820849f7

Content MD5sum

305adc0e129c44b37a79caa022c98a3c

File Size

2.3 GB

Submitted File Name

Multiome_ATAC_RP006_G3_L003_P055_S7_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

75833030

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7661NHYY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples