IGVFFI7614YLOX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4916WYYZ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X035_G5_P036_L004_R1

md5sum

9c3572b829b6eec8241257ad6b0e19dc

Content MD5sum

483aac50be0e7a860a22c80c4c082ee4

File Size

16 GB

Submitted File Name

Multiome_RNA_X035_G5_L005_P036_S51_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

241363868

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2818XKIR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples