IGVFFI7574WDKE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2596BRCT(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X037_G2_P038_L002_I1

md5sum

e9dd42d7d5995cc5e0d2f128114a2ac8

Content MD5sum

0f036b8662ace4408b73fd8906f6707e

File Size

1.5 GB

Submitted File Name

Multiome_RNA_X037_G2_L002_P038_S8_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

260234830

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0875AMYG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples