IGVFFI7531OKLA

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI7531OKLA/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI7531OKLA",
10    "aliases": [
11        "harinder-singh:multiplexed_perturbation_scRNAseq_20231117_FBHTO_NGS_LAF6401A22_L004_R2"
12    ],
13    "assay_titles": [
14        "scRNA-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012041/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "b7ca6f44760d4e55797ca6d8bc31cea5",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-04T18:56:07.487756+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/auxiliary-sets/IGVFDS5558ZQDQ/",
30        "@type": [
31            "AuxiliarySet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5558ZQDQ",
36        "file_set_type": "cell hashing barcode sequencing",
37        "status": "preview",
38        "summary": "cell hashing barcode sequencing for scRNA-seq"
39    },
40    "file_size": 1970683722,
41    "gene_list_for": [],
42    "href": "/sequence-files/IGVFFI7531OKLA/@@download/IGVFFI7531OKLA.fastq.gz",
43    "illumina_read_type": "R2",
44    "input_file_for": [
45        "/matrix-files/IGVFFI3750AJCL/"
46    ],
47    "integrated_in": [],
48    "lab": {
49        "@id": "/labs/harinder-singh/",
50        "title": "Harinder Singh, University of Pittsburgh"
51    },
52    "lane": 4,
53    "loci_list_for": [],
54    "maximum_read_length": 90,
55    "md5sum": "8b86bb78bd70d2f5328579cb68392382",
56    "mean_read_length": 90,
57    "minimum_read_length": 90,
58    "quality_metrics": [],
59    "read_count": 49492265,
60    "s3_uri": "s3://igvf-restricted-files/2025/03/04/d6317834-0370-444a-b03b-22b084d11182/IGVFFI7531OKLA.fastq.gz",
61    "schema_version": "15",
62    "seqspecs": [
63        "/configuration-files/IGVFFI6689GCYX/"
64    ],
65    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
66    "sequencing_platform": {
67        "@id": "/platform-terms/EFO_0008637/",
68        "status": "released",
69        "term_name": "Illumina NovaSeq 6000"
70    },
71    "sequencing_run": 2,
72    "status": "preview",
73    "submitted_by": {
74        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
75        "title": "Nicholas Pease"
76    },
77    "submitted_file_name": "/ix/djishnu/Common_Folder/Pease_Data/20231110_PerturbSeq/2_111723_Hsingh_5Pv2_FBHTO_LAF6401A22_S20_L004_R2_001.fastq.gz",
78    "summary": "R2 reads from sequencing run 2",
79    "upload_status": "validated",
80    "uuid": "d6317834-0370-444a-b03b-22b084d11182"
81}