IGVFFI7523YBSH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5556IRJC(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G7_P059_L006_I1

md5sum

6a58faa618513d87a8fd5dccfe8d6d81

Content MD5sum

99322ba33604c7be379a5ab0dd986c5d

File Size

388 MB

Submitted File Name

Multiome_ATAC_RP012_G7_L007_P059_S87_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

48419552

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6267UURV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples