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IGVFFI7523TEDF

released
validated
File Set
IGVFDS4161OUYL(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 268
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2116_R1
bradley-bernstein:SS-LS_268_R1
buenrostro-bernstein:SS-LS_2116_R1
buenrostro-bernstein:SS-LS_268_R1
md5sum
5542b21e8bdcea7575574c654232eedb
Content MD5sum
4d64d34518e18a1f6f6c73f5fad00609
File Size
988 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-198_L2_SS-PKR-132_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
268
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
36354273

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
5.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
962 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7523TEDF, IGVFFI6803APEV
Jason Buenrostro, Broad
1.2 KB
validated