Home

IGVFFI7508PACU

released
validated
File Set
IGVFDS3032KHHX(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 39
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2005_R1
bradley-bernstein:SS-LS_39_R1
buenrostro-bernstein:SS-LS_2005_R1
buenrostro-bernstein:SS-LS_39_R1
md5sum
12700b61b4613ce30e8df6d3d321a16e
Content MD5sum
012835882bcccf69f6fe3b0e2e18e7da
File Size
120 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-158_L1_SS-PKR-130_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
39
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
4307852

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Files Derived From This File

2 items
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.0 GB
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
423 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7508PACU, IGVFFI4386BDER
Jason Buenrostro, Broad
1.2 KB
validated