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INDEXED
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SequenceFile
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IGVFFI7508PACU
IGVFFI7508PACU
released
validated
Json view
File Set
IGVFDS3032KHHX
(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 39
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2005_R1
bradley-bernstein:SS-LS_39_R1
buenrostro-bernstein:SS-LS_2005_R1
buenrostro-bernstein:SS-LS_39_R1
md5sum
12700b61b4613ce30e8df6d3d321a16e
Content MD5sum
012835882bcccf69f6fe3b0e2e18e7da
File Size
120 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-158_L1_SS-PKR-130_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
39
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
4307852
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM8719IQYM
Tissue
brain
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9756RDEZ
yaml
seqspec
seqspec of IGVFFI7508PACU, IGVFFI4386BDER
Jason Buenrostro, Broad
1.2 KB
validated