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INDEXED
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SequenceFile
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IGVFFI7508PACU
IGVFFI7508PACU
released
validated
Json view
File Set
IGVFDS3032KHHX
(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 39
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2005_R1
bradley-bernstein:SS-LS_39_R1
buenrostro-bernstein:SS-LS_2005_R1
buenrostro-bernstein:SS-LS_39_R1
md5sum
12700b61b4613ce30e8df6d3d321a16e
Content MD5sum
012835882bcccf69f6fe3b0e2e18e7da
File Size
120 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-158_L1_SS-PKR-130_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
39
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
4307852
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM8719IQYM
Tissue
brain
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9756RDEZ
yaml
seqspec
seqspec of IGVFFI7508PACU, IGVFFI4386BDER
Jason Buenrostro, Broad
1.2 KB
validated
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad